Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs4453827 | chr3:53750084 | T/C | 1.25E-8 | 66 | 27.9 | 27.63 | 12.33 | KM Plot |
UVM | rs4457966 | chr15:40924112 | T/G | 1.26E-5 | 67 | 27.87 | 24.87 | 17.07 | KM Plot |
UVM | rs4622700 | chr2:201793113 | C/T | 2.98E-7 | 67 | 24.77 | 27.9 | 1.27 | KM Plot |
UVM | rs4663844 | chr2:239023720 | G/A | 4.67E-5 | 67 | 27.37 | 24.6 | 1.18 | KM Plot |
UVM | rs4779500 | chr15:29419891 | C/T | 8.47E-5 | 66 | 25.32 | 41.87 | 7.6 | KM Plot |
UVM | rs4906656 | chr15:26332501 | G/T | 9.28E-14 | 65 | 26.5 | 28.93 | 0.15 | KM Plot |
UVM | rs5022768 | chr2:201963576 | G/A | 3.74E-7 | 66 | 24.62 | 27.9 | 1.27 | KM Plot |
UVM | rs535902 | chr6:74191545 | C/T | 0.000706 | 67 | 2.07 | 25.12 | 27.37 | KM Plot |
UVM | rs55638494 | chr12:9565753 | A/G | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs55665529 | chr12:9572754 | C/T | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs55665673 | chr12:9566540 | G/A | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs55697855 | chr12:9604892 | A/T | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs55788133 | chr15:40664239 | G/A | 5.12E-7 | 66 | 26.55 | 24.87 | 1.27 | KM Plot |
UVM | rs55873283 | chr12:9813716 | C/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs55954396 | chr15:40870299 | T/C | 0.000227 | 67 | 27.87 | 26.12 | 16.78 | KM Plot |